Overview of LDAK-KVIK
Overview of LDAK-KVIK
The menu on the left lists several relevant topics for successfully running LDAK-KVIK. After downloading LDAK, it is possible to prepare your data using the input options. The command lines used to run LDAK-KVIK are included in the example code page. The example code page also includes command lines for generating fake genotype and phenotype data, and demonstrates how these can be used to run LDAK-KVIK.
A summary of the LDAK-KVIK algorithm is included in the steps of LDAK-KVIK, and the performance of LDAK-KVIK is showcased in performance page. It is possible to directly jump to a topic using search bar or the menu below. In case you have any questions regarding LDAK-KVIK or the LDAK software, please create an issue on the LDAK GitHub page.
Overview of LDAK-KVIK
Gene-based association analysis for genome-wide association studies
Single-SNP analysis
Information about using the saddlepoint approximation in LDAK
Getting started with LDAK-KVIK
Example code for running LDAK-KVIK
Overview of genotype, phenotype and covariate formatting options in LDAK-KVIK
User options for running LDAK-KVIK
Explanation of output files generated by LDAK-KVIK
Performance of LDAK-KVIK
Recommendations for running LDAK-KVIK
Technical details of LDAK-KVIK
Running LDAK-KVIK on the UK Biobank Research Analysis Platform
Preparing your data for using LDAK-KVIK on the UK Biobank Research Analysis Platform
Recommendations for using LDAK-KVIK on the UK Biobank Research Analysis Platform